Detailed information of SNP:
|
SNP ID:
sf0909785797(Gbrowse)
Chromosome: chr09 Position: 9785797 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 69.29% | 30.71% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 28.17% | 71.83% |
| Aus | 61 | 98.36% | 1.64% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909785797 | A->G | INTERGENIC | None |