Detailed information of SNP:
|
SNP ID:
sf0909788210(Gbrowse)
Chromosome: chr09 Position: 9788210 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 87.35% | 12.65% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 494 | 96.56% | 3.44% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909788210 | C->T | INTERGENIC | None |