Detailed information of SNP:
|
SNP ID:
sf0909811534(Gbrowse)
Chromosome: chr09 Position: 9811534 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 97.09% | 2.91% |
| All Indica | 793 | 96.22% | 3.78% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909811534 | G->C | LOC_Os09g16080(LOC_Os09g16080.1) | Synonymous |