Detailed information of SNP:
|
SNP ID:
sf0909814071(Gbrowse)
Chromosome: chr09 Position: 9814071 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 93.32% | 6.68% |
| All Indica | 753 | 91.50% | 8.50% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 58 | 70.69% | 29.31% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 195 | 87.18% | 12.82% |
| Indica Intermediate | 189 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909814071 | A->G | LOC_Os09g16080(LOC_Os09g16080.1) | Synonymous |