Detailed information of SNP:
|
SNP ID:
sf0909815526(Gbrowse)
Chromosome: chr09 Position: 9815526 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 61.97% | 38.03% |
| All Indica | 772 | 41.97% | 58.03% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 61 | 19.67% | 80.33% |
| Indica I | 362 | 45.30% | 54.70% |
| Indica II | 204 | 39.22% | 60.78% |
| Indica Intermediate | 206 | 38.83% | 61.17% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909815526 | A->G | LOC_Os09g16080(LOC_Os09g16080.1) | INTRON |