Detailed information of SNP:
|
SNP ID:
sf0909828639(Gbrowse)
Chromosome: chr09 Position: 9828639 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 96.80% | 3.20% |
| All Indica | 793 | 99.50% | 0.50% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 40.98% | 59.02% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909828639 | G->A | LOC_Os09g16100(LOC_Os09g16100.1) | Synonymous |