Detailed information of SNP:
|
SNP ID:
sf0909865382(Gbrowse)
Chromosome: chr09 Position: 9865382 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.20% | 40.80% |
| All Indica | 799 | 79.97% | 20.03% |
| All Japonica | 497 | 33.60% | 66.40% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 23.58% | 76.42% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909865382 | G->A | INTERGENIC | None |