Detailed information of SNP:
|
SNP ID:
sf0909866985(Gbrowse)
Chromosome: chr09 Position: 9866985 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.38% | 45.62% |
| All Indica | 795 | 47.92% | 52.08% |
| All Japonica | 497 | 70.22% | 29.78% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 371 | 54.72% | 45.28% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909866985 | A->G | INTERGENIC | None |