Detailed information of SNP:
|
SNP ID:
sf0909869168(Gbrowse)
Chromosome: chr09 Position: 9869168 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 93.75% | 6.25% |
| All Indica | 732 | 91.12% | 8.88% |
| All Japonica | 462 | 99.57% | 0.43% |
| Aus | 50 | 76.00% | 24.00% |
| Indica I | 353 | 93.48% | 6.52% |
| Indica II | 197 | 90.36% | 9.64% |
| Indica Intermediate | 182 | 87.36% | 12.64% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 64 | 98.44% | 1.56% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909869168 | A->T | INTERGENIC | None |