Detailed information of SNP:
|
SNP ID:
sf0909916393(Gbrowse)
Chromosome: chr09 Position: 9916393 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 93.67% | 6.33% |
| All Indica | 790 | 95.95% | 4.05% |
| All Japonica | 494 | 89.68% | 10.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 97.55% | 2.45% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 92 | 51.09% | 48.91% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909916393 | C->T | LOC_Os09g16240(LOC_Os09g16240.1) | Synonymous |