Detailed information of SNP:



SNP ID: sf0909925382(Gbrowse)

Chromosome: chr09

Position: 9925382
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1414 70.08% 29.92%
All Indica795 70.31% 29.69%
All Japonica497 77.26% 22.74%
Aus67 26.87% 73.13%
Indica I375 75.73% 24.27%
Indica II211 72.99% 27.01%
Indica Intermediate209 57.89% 42.11%
Temperate Japonica335 92.54% 7.46%
Tropical Japonica94 13.83% 86.17%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 42.86% 57.14%
Intermediate41 58.54% 41.46%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0909925382 G->A LOC_Os09g16260(LOC_Os09g16260.1) INTRON
sf0909925382 G->A LOC_Os09g16260(LOC_Os09g16260.2) INTRON