Detailed information of SNP:
|
SNP ID:
sf0909925382(Gbrowse)
Chromosome: chr09 Position: 9925382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 70.08% | 29.92% |
| All Indica | 795 | 70.31% | 29.69% |
| All Japonica | 497 | 77.26% | 22.74% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 75.73% | 24.27% |
| Indica II | 211 | 72.99% | 27.01% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909925382 | G->A | LOC_Os09g16260(LOC_Os09g16260.1) | INTRON |
| sf0909925382 | G->A | LOC_Os09g16260(LOC_Os09g16260.2) | INTRON |