Detailed information of SNP:
|
SNP ID:
sf0909927083(Gbrowse)
Chromosome: chr09 Position: 9927083 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.08% | 25.92% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 495 | 35.15% | 64.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 24.55% | 75.45% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909927083 | T->C | INTERGENIC | None |