Detailed information of SNP:
|
SNP ID:
sf0909929570(Gbrowse)
Chromosome: chr09 Position: 9929570 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.32% | 19.68% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909929570 | C->T | INTERGENIC | None |