Detailed information of SNP:
|
SNP ID:
sf0909957820(Gbrowse)
Chromosome: chr09 Position: 9957820 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 89.63% | 10.37% |
| All Indica | 797 | 92.35% | 7.65% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909957820 | G->A | LOC_Os09g16300(LOC_Os09g16300.1) | INTRON |