Detailed information of SNP:
|
SNP ID:
sf0909992669(Gbrowse)
Chromosome: chr09 Position: 9992669 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 71.54% | 28.46% |
| All Indica | 794 | 95.84% | 4.16% |
| All Japonica | 492 | 29.27% | 70.73% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 370 | 92.97% | 7.03% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 13.77% | 86.23% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 65 | 20.00% | 80.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909992669 | A->G | LOC_Os09g16350(LOC_Os09g16350.1) | Non-Synonymous SNP |