Detailed information of SNP:
|
SNP ID:
sf0910003813(Gbrowse)
Chromosome: chr09 Position: 10003813 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 66.36% | 33.64% |
| All Indica | 787 | 91.11% | 8.89% |
| All Japonica | 496 | 23.59% | 76.41% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 367 | 88.56% | 11.44% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 334 | 7.78% | 92.22% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910003813 | T->C | LOC_Os09g16370(LOC_Os09g16370.1) | INTRON |