Detailed information of SNP:
|
SNP ID:
sf0910024778(Gbrowse)
Chromosome: chr09 Position: 10024778 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1342 | 98.73% | 1.27% |
| All Indica | 786 | 99.75% | 0.25% |
| All Japonica | 440 | 96.82% | 3.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 99.45% | 0.55% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 50 | 74.00% | 26.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910024778 | T->G | INTERGENIC | None |