Detailed information of SNP:
|
SNP ID:
sf0910027392(Gbrowse)
Chromosome: chr09 Position: 10027392 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 88.01% | 11.99% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 438 | 63.47% | 36.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 291 | 50.17% | 49.83% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 55 | 78.18% | 21.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910027392 | C->T | LOC_Os09g16400(LOC_Os09g16400.1) | INTRON |