Detailed information of SNP:
|
SNP ID:
sf0910043927(Gbrowse)
Chromosome: chr09 Position: 10043927 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 55.36% | 44.64% |
| All Indica | 777 | 75.93% | 24.07% |
| All Japonica | 496 | 19.76% | 80.24% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 361 | 70.91% | 29.09% |
| Indica II | 209 | 85.65% | 14.35% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910043927 | A->T | LOC_Os09g16430(LOC_Os09g16430.1) | INTRON |