Detailed information of SNP:
|
SNP ID:
sf0910044510(Gbrowse)
Chromosome: chr09 Position: 10044510 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 82.29% | 17.71% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910044510 | A->G | LOC_Os09g16430(LOC_Os09g16430.1) | INTRON |