Detailed information of SNP:
|
SNP ID:
sf0910044543(Gbrowse)
Chromosome: chr09 Position: 10044543 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 53.45% | 46.55% |
| All Indica | 765 | 73.59% | 26.41% |
| All Japonica | 496 | 19.15% | 80.85% |
| Aus | 63 | 73.02% | 26.98% |
| Indica I | 355 | 66.48% | 33.52% |
| Indica II | 209 | 83.73% | 16.27% |
| Indica Intermediate | 201 | 75.62% | 24.38% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910044543 | A->G | LOC_Os09g16430(LOC_Os09g16430.1) | INTRON |