Detailed information of SNP:
|
SNP ID:
sf0910045360(Gbrowse)
Chromosome: chr09 Position: 10045360 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 92.78% | 7.22% |
| All Indica | 792 | 97.85% | 2.15% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910045360 | C->T | LOC_Os09g16430(LOC_Os09g16430.1) | Synonymous |