Detailed information of SNP:
|
SNP ID:
sf0910045374(Gbrowse)
Chromosome: chr09 Position: 10045374 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 88.90% | 11.10% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 493 | 84.58% | 15.42% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910045374 | T->C | LOC_Os09g16430(LOC_Os09g16430.1) | Non-Synonymous SNP |