Detailed information of SNP:
|
SNP ID:
sf0910045649(Gbrowse)
Chromosome: chr09 Position: 10045649 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 50.25% | 49.75% |
| All Indica | 764 | 79.32% | 20.68% |
| All Japonica | 494 | 4.25% | 95.75% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 356 | 72.47% | 27.53% |
| Indica II | 207 | 83.09% | 16.91% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 333 | 3.90% | 96.10% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910045649 | T->C | LOC_Os09g16430(LOC_Os09g16430.1) | Non-Synonymous SNP |