Detailed information of SNP:
|
SNP ID:
sf0910052329(Gbrowse)
Chromosome: chr09 Position: 10052329 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 86.13% | 13.87% |
| All Indica | 793 | 89.79% | 10.21% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910052329 | C->T | LOC_Os09g16440(LOC_Os09g16440.1) | INTRON |