Detailed information of SNP:
|
SNP ID:
sf0910062948(Gbrowse)
Chromosome: chr09 Position: 10062948 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 60.50% | 39.50% |
| All Indica | 791 | 91.66% | 8.34% |
| All Japonica | 493 | 8.52% | 91.48% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 87.37% | 12.63% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 332 | 8.43% | 91.57% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910062948 | C->T | INTERGENIC | None |