Detailed information of SNP:
|
SNP ID:
sf0910062986(Gbrowse)
Chromosome: chr09 Position: 10062986 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 59.47% | 40.53% |
| All Indica | 785 | 90.57% | 9.43% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 368 | 85.87% | 14.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910062986 | G->A | INTERGENIC | None |