Detailed information of SNP:
|
SNP ID:
sf0910095974(Gbrowse)
Chromosome: chr09 Position: 10095974 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 55.67% | 44.33% |
| All Indica | 798 | 26.82% | 73.18% |
| All Japonica | 490 | 95.10% | 4.90% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 21.66% | 78.34% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 211 | 36.02% | 63.98% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 75.28% | 24.72% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910095974 | G->A | LOC_Os09g16480(LOC_Os09g16480.1) | Non-Synonymous SNP |