Detailed information of SNP:
|
SNP ID:
sf0910096489(Gbrowse)
Chromosome: chr09 Position: 10096489 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 56.46% | 43.54% |
| All Indica | 796 | 27.39% | 72.61% |
| All Japonica | 491 | 96.13% | 3.87% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 21.98% | 78.02% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 210 | 37.62% | 62.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910096489 | C->T | INTERGENIC | None |