Detailed information of SNP:
|
SNP ID:
sf0910098181(Gbrowse)
Chromosome: chr09 Position: 10098181 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 56.18% | 43.82% |
| All Indica | 796 | 27.39% | 72.61% |
| All Japonica | 483 | 95.86% | 4.14% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 21.72% | 78.28% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 210 | 38.10% | 61.90% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 83 | 77.11% | 22.89% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910098181 | T->C | LOC_Os09g16490(LOC_Os09g16490.1) | INTRON |