Detailed information of SNP:
|
SNP ID:
sf0910107487(Gbrowse)
Chromosome: chr09 Position: 10107487 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 96.94% | 3.06% |
| All Indica | 788 | 96.83% | 3.17% |
| All Japonica | 492 | 96.34% | 3.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 332 | 97.29% | 2.71% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910107487 | T->C | INTERGENIC | None |