Detailed information of SNP:
|
SNP ID:
sf0910120828(Gbrowse)
Chromosome: chr09 Position: 10120828 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.68% | 29.32% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 494 | 23.89% | 76.11% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 7.53% | 92.47% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910120828 | A->G | INTERGENIC | None |