Detailed information of SNP:
|
SNP ID:
sf0910123665(Gbrowse)
Chromosome: chr09 Position: 10123665 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 55.17% | 44.83% |
| All Indica | 796 | 94.22% | 5.78% |
| All Japonica | 494 | 0.61% | 99.39% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910123665 | C->T | INTERGENIC | None |