Detailed information of SNP:
|
SNP ID:
sf0910146322(Gbrowse)
Chromosome: chr09 Position: 10146322 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 62.02% | 37.98% |
| All Indica | 796 | 93.97% | 6.03% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910146322 | A->G | INTERGENIC | None |