Detailed information of SNP:
|
SNP ID:
sf0910160375(Gbrowse)
Chromosome: chr09 Position: 10160375 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.02% | 38.98% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910160375 | T->C | INTERGENIC | None |