Detailed information of SNP:
|
SNP ID:
sf0910186685(Gbrowse)
Chromosome: chr09 Position: 10186685 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.45% | 40.55% |
| All Indica | 795 | 94.34% | 5.66% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910186685 | T->C | INTERGENIC | None |