Detailed information of SNP:
|
SNP ID:
sf0910196735(Gbrowse)
Chromosome: chr09 Position: 10196735 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 55.97% | 44.03% |
| All Indica | 771 | 90.27% | 9.73% |
| All Japonica | 494 | 1.42% | 98.58% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 200 | 78.00% | 22.00% |
| Indica Intermediate | 200 | 97.00% | 3.00% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910196735 | A->C | LOC_Os09g16630(LOC_Os09g16630.1) | Non-Synonymous SNP |