Detailed information of SNP:
|
SNP ID:
sf0910196863(Gbrowse)
Chromosome: chr09 Position: 10196863 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 88.15% | 11.85% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910196863 | T->G | LOC_Os09g16630(LOC_Os09g16630.1) | Non-Synonymous SNP |