Detailed information of SNP:
|
SNP ID:
sf0910197202(Gbrowse)
Chromosome: chr09 Position: 10197202 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 58.00% | 42.00% |
| All Indica | 795 | 92.20% | 7.80% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 209 | 83.25% | 16.75% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910197202 | T->G | INTERGENIC | None |