Detailed information of SNP:
|
SNP ID:
sf0910209789(Gbrowse)
Chromosome: chr09 Position: 10209789 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 70.26% | 29.74% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910209789 | A->G | LOC_Os09g16660(LOC_Os09g16660.1) | INTRON |