Detailed information of SNP:
|
SNP ID:
sf0910216056(Gbrowse)
Chromosome: chr09 Position: 10216056 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.62% | 20.38% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 48.89% | 51.11% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 57.61% | 42.39% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910216056 | G->A | LOC_Os09g16680(LOC_Os09g16680.1) | Non-Synonymous SNP |