Detailed information of SNP:
|
SNP ID:
sf0910237583(Gbrowse)
Chromosome: chr09 Position: 10237583 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 51.48% | 48.52% |
| All Indica | 797 | 85.57% | 14.43% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 211 | 69.19% | 30.81% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 24.39% | 75.61% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910237583 | A->G | INTERGENIC | None |