Detailed information of SNP:
|
SNP ID:
sf0910251195(Gbrowse)
Chromosome: chr09 Position: 10251195 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 94.74% | 5.26% |
| All Indica | 791 | 96.97% | 3.03% |
| All Japonica | 476 | 91.18% | 8.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 95.39% | 4.61% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 315 | 89.21% | 10.79% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910251195 | T->C | LOC_Os09g16760(LOC_Os09g16760.1) | UTR_5_PRIME |