Detailed information of SNP:
|
SNP ID:
sf0910258534(Gbrowse)
Chromosome: chr09 Position: 10258534 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 78.22% | 21.78% |
| All Indica | 786 | 81.04% | 18.96% |
| All Japonica | 496 | 70.97% | 29.03% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 75.74% | 24.26% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 205 | 78.54% | 21.46% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910258534 | A->G | INTERGENIC | None |