Detailed information of SNP:
|
SNP ID:
sf0910259210(Gbrowse)
Chromosome: chr09 Position: 10259210 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 83.95% | 16.05% |
| All Indica | 782 | 82.48% | 17.52% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 73.84% | 26.16% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910259210 | C->G | INTERGENIC | None |