Detailed information of SNP:
|
SNP ID:
sf0910260089(Gbrowse)
Chromosome: chr09 Position: 10260089 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 86.26% | 13.74% |
| All Indica | 777 | 86.74% | 13.26% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 358 | 80.17% | 19.83% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910260089 | G->A | LOC_Os09g16780(LOC_Os09g16780.1) | Synonymous |