Detailed information of SNP:
|
SNP ID:
sf0910261903(Gbrowse)
Chromosome: chr09 Position: 10261903 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 74.98% | 25.02% |
| All Indica | 758 | 55.01% | 44.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 352 | 46.59% | 53.41% |
| Indica II | 204 | 79.90% | 20.10% |
| Indica Intermediate | 202 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910261903 | C->A | INTERGENIC | None |