Detailed information of SNP:
|
SNP ID:
sf0910311861(Gbrowse)
Chromosome: chr09 Position: 10311861 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 80.17% | 19.83% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 496 | 50.81% | 49.19% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 62.99% | 37.01% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910311861 | G->A | LOC_Os09g16880(LOC_Os09g16880.1) | Non-Synonymous SNP |