Detailed information of SNP:
|
SNP ID:
sf0910314477(Gbrowse)
Chromosome: chr09 Position: 10314477 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.91% | 10.09% |
| All Indica | 789 | 88.72% | 11.28% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 203 | 65.52% | 34.48% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910314477 | C->T | INTERGENIC | None |