Detailed information of SNP:
|
SNP ID:
sf0910349605(Gbrowse)
Chromosome: chr09 Position: 10349605 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 96.13% | 3.87% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 478 | 89.96% | 10.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 47.62% | 52.38% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0910349605 | G->T | INTERGENIC | None |